Scaffold Ga0224906_1003793

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1003793
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6587
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002593	Metagenome / Metatranscriptome	545	Y
F006589	Metagenome / Metatranscriptome	369	Y
F071638	Metagenome / Metatranscriptome	122	Y
F083387	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_100379311	F083387	N/A	MVKKLIVLCFLAGCVHTPEVKQKEWNDRYNPNDWRKQFEKCKAIHYAPYPEEVILDEWRKCMDEKDYG
Ga0224906_100379314	F006589	N/A	MLKELLEKKVNSLINTNDLTDMQVWGVMCAIGFISAFIIMWII
Ga0224906_10037932	F002593	GGAG	MSKLIYSRNGSATTKSIRTAPPMLQAIWDRSHMFGANIVRVRANQNRFGNDTGKTFNSYHHEKVSVYKQKDEVHESNALYFAQKIPVTKSNKGMQILEVSSNLDVQDTLDIIDEIQYYAETSFLGRLWNRIRYGTPMSITS
Ga0224906_10037934	F071638	AGGAG	MSKNIDTKKFNSNEKALRYIKELGFSLKDRHCFKEDRSFLYTKKFSKQQVYLRSTYDFLNDNTIEMGTVWTVQVF