Scaffold Ga0224906_1003549

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1003549
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6850
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED161 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029713	Metagenome	187	Y
F033766	Metagenome	176	Y
F040580	Metagenome / Metatranscriptome	161	Y
F072373	Metagenome	121	Y
F085551	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_100354914	F040580	AGG	MTHKEFFNVLVGNPPPQIELEIEIRKREVEALPEFVMKQYCLDLVKENKLQDFLIMAAMQRITETETKLLRVEMALHHRTKNLKQKKKLTFFNRLKAMLGMLR
Ga0224906_10035494	F085551	GGAGG	MSYSVRTRLHHWIETCPCTNFLVKNKKEQEQVDGVWYDVVVVECLVKAEEQNHDPM
Ga0224906_10035495	F033766	AGGAGG	MSDYPYNLTAIATHLRELCLSIAKKLDISEDDAWDLCMEKLESKFLRMKREDDQ
Ga0224906_10035498	F072373	GAGG	MKWLTDQKQKCWDKAYQDYQHESGLSAKQVSDFIKINPYVALTIENKALEYLNKPN
Ga0224906_10035499	F029713	N/A	MSNDKYDSEAELKAAKRAEIERLWFAEEATNENLLQAYKALDIKKEDL