Scaffold Ga0224906

Basic Information
Taxon OID	3300022074 Open in IMG/M
Scaffold ID	Ga0224906_1002864 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022074 Open in IMG/M

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7782
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (73.33%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

7782

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (73.33%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F002221	Metagenome	581	Y
F006845	Metagenome / Metatranscriptome	363	Y
F038657	Metagenome / Metatranscriptome	165	N
F063662	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_100286412	F002221	GAG	MKTYLDESFESGLKKLRAYESESFERWGSRKRIFKMLGLDFEIKFCRAESMFKDALYKGHVKEKIKMVEMMTRAFDSLNKKCEESGYTRIQPNTRCFNFDKKTAIVCDTDDEKPILNKIHKDEPDMMIFSVEELLRCIPSDFMKAKELLSKLDKTVNFARISYD
Ga0224906_10028642	F001942	N/A	MAKTSEDHQGNSRLGALGESLVQTFLLEYADFVYPTQDKHPADLLFEANNAKYTVQVKTRRKSKEGKFTFAVEKQRNMSEIYKNYHCDILAFVFFSQEYKRIIFKPNTTPQNYFTFSEKVITPTLEIDSLQETLDTLSQVPVLNPLK
Ga0224906_10028643	F063662	AGGAG	METNEVIFNIVGAGQICLPKREIRGYYKDFLTGETKVQVGESEHKVRESLTEIAYLMGVV
Ga0224906_10028648	F006845	GAG	MKSYKRRMDLNSYLFEEDFEEFCRSSYNKIQVACEFLGIINDEDYEGFKERCYTQLETDYINSIENLTIH
Ga0224906_10028649	F038657	GGAG	MSILGGMSSTENKQQIYLGFKTMGQKFYANGETEVDVKYLQLDPETFKSGWGRYTKADGFQYKWDAKFGSVDPKPDEDWKRAFSCWVMPHGAEHAYLWQRFTFAESSAFDSILDLFWNDRANNVGKLPVVEFTGSKIIQVGMGSSSELSFKFSKWADRFDGNAIPDWYIDPDAPSDDDDGFVSPNEGLADKVNDMIVKTSELSDDDIPF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0224906_1002864

Overview

Ecosystem & Geography

Associated Families

Sequences