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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022074 Open in IMG/M |
| Scaffold ID | Ga0224906_1002226 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9003 |
| Total Scaffold Genes | 28 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (82.14%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 33.55 | Long. (o) | -118.4 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F016167 | Metagenome / Metatranscriptome | 249 | Y |
| F023955 | Metagenome | 208 | Y |
| F036426 | Metagenome / Metatranscriptome | 170 | Y |
| F053634 | Metagenome / Metatranscriptome | 141 | Y |
| F064099 | Metagenome / Metatranscriptome | 129 | N |
| F098062 | Metagenome / Metatranscriptome | 104 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0224906_100222611 | F053634 | AGGAG | MKEVLEKITQLISGMNDTQSEHSASILKSRYEMLELLKVLRELGVIKTDTIERIYKKGEEYEQSNDESRGSTRDIH |
| Ga0224906_100222617 | F016167 | AGGA | MAKMSERQREYFLSRVYDEIYNHKRSLELKESSAKEKMVKKLYPKYVEQVGLKKELAELQTLETKYNKLLNHMDSTISRMFKAEELYMHDGNDNYARVVSNLTKLAKKTLDREFVKSHEGKAMLQLDQAHQRAKDIIWSAGSDSNIMQVVSNVLSKDAGISLDYNPLQIESK |
| Ga0224906_10022262 | F064099 | N/A | MSNIYRLIIIILLVYIIWVDHRYVQVGWCESEIDILRNTIAEIHTTITKGN |
| Ga0224906_10022263 | F036426 | AGGA | MKSLVILIAMLFSTIAFANDYAPDRNDRINLYKVVSDNENAPLYSGYYKDSNGEVHQVAVWAGNSDKYLEGPVTKVESN |
| Ga0224906_10022264 | F098062 | AGGA | MSTQKEMYGQTRDSVIAQFKKVKPLYAGKSNLYIMGILSDAQMMIDNKQYKTANQFINKAKLLLSAKYK |
| Ga0224906_10022266 | F023955 | AGGA | MKVKHNIKIVRQDGDVEYHDVEGEWNEEGSGGPSFKPLYELLNCKMLEVTYGMNLQDTKELPIFLDEEGLYKENNQINGYATAMQKRWCDATGRMQISPIVGDVAIDLGLTVESLTEVSTELELQNNEREDNTTQA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |