Scaffold Ga0224906_1001909

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1001909
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9790
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006728	Metagenome / Metatranscriptome	366	Y
F035551	Metagenome / Metatranscriptome	172	Y
F046646	Metagenome / Metatranscriptome	151	Y
F073418	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_100190911	F073418	AGAAGG	MTFDKSHLKLIRQSMQDALDQAGIKDVTIKVGNCSYSGGEATYKVQVLLDGAESHEQSALGQMASMLNIDTTKIAEINGESVSLTGYNAKARKMPWQVKSLVSSSQWKLTDSQAQRMFGE
Ga0224906_100190912	F006728	AGGAGG	MAKLDFNNIVVRHNGRTISIAQHWSRTSEGDFINAQEIADVGELYHDDYDPIRFDDTIDGLINALQAIKKDIEL
Ga0224906_100190913	F035551	AGGAG	MELREITQALSNGDDVRWANDGYRVQWENLPNGPAITIRYTTNGFGGAMAGSEMKDCYIR
Ga0224906_100190915	F046646	AGGA	MFYCIATKPLNDRTNGFRFNVLGIKGLTRKRKTFSRGFKLEAGNCMTALHLGKRTVYFERKPNRASTRRVRHFAG