Scaffold Ga0224906_1001847

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1001847
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10007
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028320	Metagenome / Metatranscriptome	192	N
F064687	Metagenome	128	N
F066583	Metagenome / Metatranscriptome	126	N
F093793	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_100184710	F028320	AGGA	MANQYRKVINITLFPNSEGKATHGNSKWTPYKDGSPADIYLRKDARYSVKLFGNDDGSLGLAISEVVQGVYTDSISDGVSQPGMKSLAASIDPPKTSPISALKDELDDEVPF
Ga0224906_100184721	F064687	GGAG	MKNNINLIRKYAKKCKTKERFKEVVLSLKVLGDSKDHMADVTLDAYWSYYNELEPVEQRMRDVTRFVHGYVSKHIQDKLFS
Ga0224906_100184726	F093793	GGAG	MTKKQIAEYLILFVLGLIITIGFVNPVSKEYTWWNLIYQSKDLTQ
Ga0224906_10018478	F066583	GGAG	MKYNKAGTDFENCYVCGTKLKEVTHKRNIQRRCKSCIYHGVGEIKPSVEEGDEDDWSALDDPRAVNEKDYGRVFREPTRVYSGHSSLSELVGGSSSYSHIHGPSRDGVRYSNRKKKE