Scaffold Ga0224906_1001787

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1001787
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10294
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (25.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014724	Metagenome / Metatranscriptome	260	Y
F016795	Metagenome / Metatranscriptome	244	Y
F044418	Metagenome / Metatranscriptome	154	N
F045676	Metagenome / Metatranscriptome	152	Y
F055643	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_100178714	F055643	N/A	MTTKELIELINSTQDGEIWLYSSKLKDHLATVEQALEEDLIHFIRADVGNSTTEFIRVSI
Ga0224906_100178725	F045676	N/A	MSAERVPYPELDCSIAMSKARGNLNFLVNRTKEEWSETFTTAQAIQDAHAALVLAQEEYEKVLTLLRESTKL
Ga0224906_100178726	F016795	N/A	MTEQLETFMTEELGIIDRLGRDPLEGLDLFEDVGGNIWTLDQIIHEFNNQ
Ga0224906_10017875	F044418	GAGG	MSHEQRMIDYAQKWYKENDLETEKKNGNDLYLRVNDNVFTEVSHCDIRQKAILWLQSELEGVMYS
Ga0224906_10017876	F014724	AGGAG	MKEEIYAIKTAIDGLSDEMLEHRRHANMEDLVKVMKNINENLVSISFDLKDLVEAKKFQNELTTALR