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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022074 Open in IMG/M |
| Scaffold ID | Ga0224906_1001772 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10351 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (41.18%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 33.55 | Long. (o) | -118.4 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002215 | Metagenome / Metatranscriptome | 582 | Y |
| F003751 | Metagenome / Metatranscriptome | 470 | Y |
| F004325 | Metagenome / Metatranscriptome | 443 | Y |
| F035329 | Metagenome | 172 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0224906_100177214 | F002215 | N/A | MEPQVIAAIISGSIGAFAGITRALGNFNKKLDRRFEKIERNVEKLKNEVLHDYVLKEDFLREMQGVHSKLDRILDHLLSK |
| Ga0224906_100177217 | F035329 | GAG | MATRKALVLVSGLFQELNSSSDKLDFAGNSTSDLSEGTNEYFTQARAR |
| Ga0224906_10017723 | F004325 | GGA | MKHKKTSTTEKADKFLQGIGTSGGPIGSPQLIGFGGTDVQSQIAAGNSDEYANIRMREGDTRVVEGSKMPSDLDASYLKLNLPGSPLPANGLLVPQNLRAAERNQDMIGVSEQMFLAKYLPAAGLSQLPVGQPPLESKKGKK |
| Ga0224906_10017726 | F003751 | AGGAGG | MATYKSNAGAILQPGNQINKLSSFNSEGVLGWPGIELFEQIGYVKVTNVAADKASFKSFSITVPSPDRRVSDRVRDDRTSLVVNASAARPAYVYGASIAIAQDDPAGGLASFPASPITADLGGTTGELILLGPDNSGSPIGVPATQLLGNAAAHSSLTASSSLFAQGASDTTTGDVPFWTSVTSTIERADAANSMMYKVTADTTFKVYNVDAITGTSVNGDGVFISADDSTAGRAAYIVCRVNYLRPATAVAWSDVSSLVDFASQVGGTDS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |