NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1001551

Scaffold Ga0224906_1001551


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1001551 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11214
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (92.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002858Metagenome / Metatranscriptome525Y
F003225Metagenome / Metatranscriptome499Y
F008883Metagenome / Metatranscriptome326Y
F023856Metagenome / Metatranscriptome208Y
F024320Metagenome / Metatranscriptome206Y
F026889Metagenome / Metatranscriptome196N

Sequences

Protein IDFamilyRBSSequence
Ga0224906_100155117F026889GGAGMNNVIQDYLALVERTVYHSDLDAFDALEQLEEDYPELADLVYQSAGPLAYDIQNNEVAS
Ga0224906_100155118F008883AGGTGGMNFGRYTIWYNHEDHVWDIYDGNKGYKYPEFTINNYSRLLCGLRDRLGFLDTDKNHRRFWRVMRWWDRLRHGRR
Ga0224906_100155123F024320AGGGGGMTFEEYEQGYYSGDSEDPSGPTEDPETHAMVEHLVEFDTEMYRLESRRKYKGLSYKHLEMLMVELHGREWRDAL
Ga0224906_100155124F023856GGAGGMRCKACDRILEESELTKKDTHGDFLDLCGICLSATASAGVDTETMQYYQYEIFTEDENYDTLY
Ga0224906_100155125F002858AGGAGMLIDEKSIYEVTGGDYSVYCLGYTQARTVTNDIMKRDPWGGIPFVIRKDLELSLDDRGNVVMTKSTLDKILFL
Ga0224906_10015515F003225GAGGMTPELETYFDNYNELFNHEGFKQLVQELSNNAQQLADIQTVKDTEEFFYRKGQVAAFATVINLQGTIEAAREQAEAEEEGPVDV
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