Scaffold Ga0224906

Basic Information
Taxon OID	3300022074 Open in IMG/M
Scaffold ID	Ga0224906_1001466 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022074 Open in IMG/M

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11518
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (33.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

11518

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (33.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Taxonomy

All Organisms → Viruses

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020797	Metagenome	222	Y
F025153	Metagenome / Metatranscriptome	203	N
F042580	Metagenome	158	Y
F047319	Metagenome / Metatranscriptome	150	N
F052892	Metagenome / Metatranscriptome	142	Y
F079230	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_10014661	F079230	N/A	MIDSLIYGIVASSFVIGITRSVLLLYKRFPSLGFGLVYGSLGVKMFALGAFTLLARPYIENVIIYCFIILSSIIYSNVYLALKLHRK
Ga0224906_100146613	F020797	GAG	MIKLESILKSIPNQKIIETDLGQWEYPGRITRIPSNSITMEPDPRTGKPIQHILLIIGDQSGEKKIGIPGGPELYFPNDKTVTEYPIKKYP
Ga0224906_100146620	F047319	N/A	MYNQGETVIVTENLDKKGKEQKHEVGVIMKAFVHKKQTFYDVLLERRTALSFLNTAKSSKRHFVNRDLTKRLCESGNIESTIPFRYMLDNEQLPIIIA
Ga0224906_100146621	F042580	N/A	MARPRIPEIDKFKKRVRKRYPGSRCVQDSYGQYYVEWNSENLNDIFLLDNALTEIKAWEQASITAKHEQHINRTHPMKKLVSEEQKNLNKERKTKRIRKYE
Ga0224906_100146626	F052892	N/A	MRPTNSLYIPPTIEYQNKRYNIRRLVRENPDENIEFWKNLIEHDVVLRKDGYLWFLIEISDAEIIIE
Ga0224906_10014666	F025153	N/A	LIKLKDILEQSIGFQVPGTPKQKNIGRQTRQEFAKFFNNFEAGNTKTAISNYAEQIMNSDAPDDIKKKVSEILNEMETVAIDIQDELHTRQISDDAVAEKLFDYVNSEMDSSDSIEFEQLLWYDNQIDMSIKSGMIENAVAIMGQLLQQLEFIRGFILQEFPEISTIGFKR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0224906_1001466

Overview

Ecosystem & Geography

Associated Families

Sequences