Scaffold Ga0224906_1001286

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1001286
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12339
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (96.15%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005178	Metagenome / Metatranscriptome	409	Y
F027837	Metagenome / Metatranscriptome	193	Y
F058514	Metagenome	135	N
F062259	Metagenome	131	N
F078593	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_10012861	F078593	AGGA	MGNSVKVSKSTQDGTKLDDLVKEGKALGKMWSALHNVKQSTKANGFDTRLGKLLVELKAQSTLDSGQISRQTLTTYGVHNIDRRRRSEALWFVENEVDCREFIKNSKKGFTSLTALQKAMKDATAKAEVIKEAADKVSNVGQSDEVNDTGWVEVDKGTYSLGNTRTAIVDAIFAHCNDHKIDIETIIADLQSKAALANKVAA
Ga0224906_100128612	F005178	AGGAGG	MMYILIWMQLFSTQTVEYYQLGNYATLEECQIELSKAAKMITHKSETVACLEVEIQQ
Ga0224906_100128613	F062259	GGAG	MTDKEELDAEVRDAFDRAKTALMYDYMYMGTEVGRDNLEYMGFKHIETREYIKIPKCGVAFNDTV
Ga0224906_10012866	F027837	AGGAG	MRYEMQNFVKFATTKKVSNVGQKPKRDEHKRLRRIARKNKSLTRKLSQ
Ga0224906_10012869	F058514	AGGAGG	MKVNAYEIVIEIDGVKSCINLDDLYPAIKDWHTATEFAMMMAREANPDAIQIDFLECGEYELEGYEHIPYIHEAPFQVQ