Scaffold Ga0224906_1000839

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1000839
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16117
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080631	Metagenome / Metatranscriptome	115	N
F102086	Metagenome / Metatranscriptome	102	N
F102107	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_100083914	F080631	N/A	MIRTDIIKRLQSYLQTHYDGNITILTEEDDGDLTPPCAVVRISSAEDMGANQAYVWDFNVIVAVFHDADDVTIETAETDSAELFNELADYEDVTAYLNSGNFQASVWHPQLIEAGREETKWTHFQTYRLIAGPA
Ga0224906_100083919	F102107	N/A	MAITTNEIIWGETYNISVSAQNAGGNAVTIDGTWSAACRISKDYIGGDVILNPTMTIAAGVATTSLDTGNDEFSHGVYYYDVRLTDANGHDYWTDPVRLILANRNTPNT
Ga0224906_10008399	F102086	N/A	MQTAIANSIKDAFVQHRADYGVSITIDGETVTAIVSESQFARELMEGGFADEGDIEVKVLLSDLTQIPSLGKPVLFRSRNFRVSRVGTQPGALVGEISCRPARR