Scaffold Ga0224906_1000808

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1000808
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16480
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (74.07%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014446	Metagenome	263	Y
F033764	Metagenome	176	Y
F036434	Metagenome	170	N
F045804	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_100080812	F036434	AGGAG	MDTSKYKSVATKMDTYNKAKIIASHSHRSIGAVISMLVDQEWNKQKPGVKKELKSAA
Ga0224906_100080818	F045804	GGAGG	MEKLIKETLGIAAQLVSKAENKSAKLTKRMIVNDLKMIKLNLMMIQDDITRQPKQKD
Ga0224906_100080824	F014446	N/A	MNLSMRDWIWIMGIVAGIATTYGMMSSRVTALESSIKDLDMLRIDSRLSVIEIQVIEINEKLDKLLD
Ga0224906_10008086	F033764	AGGAG	MIVDKYVVNNIGSKWTKGKRKNNQLLSSLDGTDGIELKKLVPLLEQWHETVNGEWATRNIEVIINVRESDNE