Scaffold Ga0224906_1000664

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1000664
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18632
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004343	Metagenome / Metatranscriptome	442	Y
F008882	Metagenome / Metatranscriptome	326	N
F032075	Metagenome / Metatranscriptome	181	Y
F038638	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_100066414	F032075	AGGAG	MSKLHHTKYRKNYKNYILDCIDSEDDLINQELTRNQKIQYLFNRFNSEYGWNIQRVGKYKAMEEWLSGLAINIPYTYFDIIELAKEMGSIDSNPSEWLKNWICENYFSFMAQMVLSLEDELEEVA
Ga0224906_10006643	F038638	AGGAG	MSYEIAEYRYTNHMREHYGLIGEIEYPSRTRSHQDEKGNWLLISEQGLKMAKIFKNGDII
Ga0224906_10006646	F004343	GGGGG	MTQHKEMIEEARRLLKTERENIPSMSKNFNKDYWLLTYPCGKIVKTYEDKRKNDVIIQES
Ga0224906_10006649	F008882	GGGGG	MSLARYNFNKPKINRQELELLNWFLAHTNDNPLINPQALELFKANGYSAKNYQDLVNKVKTILKTYKTKGERA