Scaffold Ga0224906

Basic Information
Taxon OID	3300022074 Open in IMG/M
Scaffold ID	Ga0224906_1000592 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022074 Open in IMG/M

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19775
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	54 (96.43%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

19775

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

54 (96.43%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032243	Metagenome	180	Y
F034754	Metagenome	174	Y
F040924	Metagenome	161	Y
F046990	Metagenome	150	N
F074049	Metagenome	120	N
F084450	Metagenome	112	Y
F094417	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_100059217	F094417	AGGAG	LEENKFKKGDLVKRMIASHYTDHIRSDANGVVTRVFYPLARVYFYDTNREEVWNQKVLELVSSKPERD
Ga0224906_100059232	F032243	GGAGG	MSSNYEMFGAEEDWVQPMVGDLVECRIGYARTSLGIVVEPCDAIKRDDLWCQVALNGGGMKILPKKDVTVIQRGEE
Ga0224906_100059234	F034754	GAGG	MKVGDLVDINQKRGTGSYEKITPRGLGVIMSFQELEDLHYPNIGSINLGPIVHVLLNTGETEGFAPQSLEVLS
Ga0224906_100059237	F046990	AGGGGG	MTVIRRRLKVGELVNVHADMDDIDDWNKSKGLAVILDTDPDPERPGLIEIRYVKPRGLPEEQLPIQKLINNFSLTRVK
Ga0224906_100059238	F040924	GAGG	MKTKMVYLTVAVEMNAEADEREVVENCDYFFDSSEIVSAAIEEIFTEDEMVDKKEQADLYGLGSSNFA
Ga0224906_100059239	F084450	GGAG	MTEEQMMIEAWVKKNKPKRYIHGERPEGVEPPTISNWGRRRRSKAEVQAEKDAERG
Ga0224906_10005929	F074049	GGAGG	LNSLEYKPELEYDIWQPSEIKGRPDLNVTIRLMPITERAEQRIQEYGDVMKLMHISHSGPFDCNEEQILVMSLNEKWQGWFRNGTDVNFELT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0224906_1000592

Overview

Ecosystem & Geography

Associated Families

Sequences