Scaffold Ga0224906

Basic Information
Taxon OID	3300022074 Open in IMG/M
Scaffold ID	Ga0224906_1000372 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022074 Open in IMG/M

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26243
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (76.74%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

26243

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (76.74%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003361	Metagenome / Metatranscriptome	492	Y
F005819	Metagenome / Metatranscriptome	389	Y
F022417	Metagenome / Metatranscriptome	214	N
F050395	Metagenome / Metatranscriptome	145	Y
F069469	Metagenome / Metatranscriptome	124	N
F089558	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_100037212	F069469	GAGG	MKVKILIGSDFPINKKEVRAEAGEVLELPDKVAKALIKNNAAIKFDSKMMKEEEE
Ga0224906_100037214	F003361	N/A	MKLTLNGALDLSRSINSQSIWNKRSNDFFNDLARELKQDSLNALENKPSPRSQAGRGNKNTGKTRRSVFTAKLGNTNRLRMSEGFKLATDLNYAPFIHGKPIYRGFSPIKRTKPFFPPYQEGSSLAKWAKRGQPKMNPFLVARAISKRGLKMKPFIGGVVYEKQKEIKEGAEDMLRLIARDIARSVK
Ga0224906_100037221	F005819	AGG	MDYIDDMSLALPNQQQVGESNVDFKRFQYYLALGAGRTLLKVSENFSLTERRIYQISSKNQWQDRVKAINKMLNEQIIGEVFAQVGETARDLADELKPVIFRIINEINERDLASMNPTELKGLLDICYKMISQIYGLGTPQVTVNHIEQPQIKFKWDWEQDDEPDY
Ga0224906_100037230	F022417	GGAGG	MAQMPKFLEDYTTVDELISKMNKQYPECRLIAEMIGYGDDWVIFKSSFYETKDDTEPKAVAYAKQTSKDHNSWFEMANTKANGRCLRIVFSESTLAEEMIGIAPSKEAAPKEKTLDQKVKELEAEGLVEDITDKTQAIMDNIKDFALNIAKQDLDLARNYTAQALGAMNMSKTDVSINNLQSVKNKIQDIATMAISDADKGE
Ga0224906_100037231	F050395	N/A	MYPLKRKNKYKWEYRFLYWNIDKPEINLYTYKTDEGFQVAESAAWGNATWDNCKNMKYIGKTKMEVENGTNA
Ga0224906_100037236	F089558	AGGAGG	MTLLQYSEQQGKKPTGQFAATRFILDNPEAKKIFLKVAKEAETEYISDTTAAQYLVDQYEQFAHLNYNTVRRYFRDYRDGRIK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0224906_1000372

Overview

Ecosystem & Geography

Associated Families

Sequences