Scaffold Ga0224906

Basic Information
Taxon OID	3300022074 Open in IMG/M
Scaffold ID	Ga0224906_1000302 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022074 Open in IMG/M

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29080
Total Scaffold Genes	47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	34 (72.34%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

29080

Total Scaffold Genes

47 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

34 (72.34%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021206	Metagenome	220	Y
F049285	Metagenome	147	N
F051868	Metagenome	143	Y
F065691	Metagenome	127	Y
F067202	Metagenome	126	Y
F070649	Metagenome	123	N
F089518	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_100030212	F049285	GGA	MKLIKVRVNRTIEYEVSVGVDDDHKYEQVRDYLQTIDWDKEIGISPQNYKQISDYYDWIDWEEENV
Ga0224906_100030216	F089518	AGG	MEYVIRIKGKGGKCFAYHSTKDKSELDRLVKKYLAMKDITFEIHRRYLA
Ga0224906_100030218	F065691	N/A	VARRKRTEDIPLNIYLPEPITILVGVLAFLLGFLYKKHSDKEDIADAFEEGFEKGTKDVVRALSDITGRDMQIELEREDLDR
Ga0224906_100030223	F070649	AGG	MQPKDKPSHIRIKHEPTQTQTKRICKLYGKQFRNMAEAARYWDISYAWASEQVRKGWNQNNFPPKARKGYSLRWWG
Ga0224906_100030236	F051868	AGAAG	MSKPTKKKTLEQEAQEFIKEEIPSDDVSTRDYFAGAALSGLLAASGKYLRSDEIINQAFCYSCLMLDYKKNKDKSS
Ga0224906_10003028	F021206	N/A	MTVTLNQILAMENVLATRKIPSDIEAMAKAKRYSESKQKVITLGDQPLHYVLRILAKEGLGDAV
Ga0224906_10003029	F067202	AGGAGG	MQFKDVIIGAEDLECHTIDTVAEAISEHIIELGLATPETLTGFTWRLDVRMRVDNETV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0224906_1000302

Overview

Ecosystem & Geography

Associated Families

Sequences