Scaffold Ga0224906

Basic Information
Taxon OID	3300022074 Open in IMG/M
Scaffold ID	Ga0224906_1000298 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022074 Open in IMG/M

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29361
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	44 (89.80%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

29361

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

44 (89.80%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020815	Metagenome	222	N
F028349	Metagenome / Metatranscriptome	192	Y
F032993	Metagenome / Metatranscriptome	178	Y
F044198	Metagenome	155	N
F051059	Metagenome / Metatranscriptome	144	N
F087896	Metagenome / Metatranscriptome	110	N
F090997	Metagenome	108	Y
F094531	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_100029812	F028349	GAGG	MQVRTYHKNGKAVQFLGYSDIDASNAAKVVMGEIGDVGYFKPRLGADEWIYDWVYVKETTDEDLQRVLGK
Ga0224906_100029813	F020815	GAGG	MRLYMNKQGEWVGTQAEAKKIGADMVDVPTDKPNLLKWLNTFTGKIDLAEIPPLDAAKPNPGTVARKPHKYDFWDNIRDVAENCSLTDFNVALAVFMDRVHDIADKQKETQQ
Ga0224906_100029814	F087896	AGGAG	MNYKTSQGVELSEDGYTKVVKQVNLGYGWEATLYNNDRLLLTRDATGDTLSIPPESTKTLRDIITSITKEK
Ga0224906_100029818	F051059	AGGAGG	VYYALDIYSKATKKMFAYHSSDSRRDILYLKKMYDTNEFVYIKECFGETDEDKENYRKSAKYGDTSIAS
Ga0224906_100029819	F032993	GGAG	MKTKKIIGSLPNMEIPQLPVSLLSHMEAMGLLPKSHEDDGVNDIDMPRVPHKNFFRVDVLDKEGEPLF
Ga0224906_10002982	F094531	AGGAGG	MITEDAIPAYNKQFKQLVGSNILDFEMVQCDFDPHQYWPTFKMRLGDQKYKLVLSQDEEGNGGGFAFIE
Ga0224906_100029825	F044198	AGGAG	MQPKNVPCHIRIKVEPTQQQKGKACRLHGKDFKSIADAARHWNVNYSWAAEQVSKGWNKEGFPQKHRKSYV
Ga0224906_10002986	F090997	AGGAGG	MRIRVKAEETVYLEYFVDVPKHILNVSDFLLSKTYLKNAIHNWVDENESEFNYQDYDSDRSWYDWEEVQDND

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0224906_1000298

Overview

Ecosystem & Geography

Associated Families

Sequences