Scaffold Ga0224906_1000289

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1000289
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29766
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (38.30%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010211	Metagenome / Metatranscriptome	307	N
F021099	Metagenome	220	N
F027355	Metagenome / Metatranscriptome	195	Y
F033999	Metagenome	176	Y
F060872	Metagenome / Metatranscriptome	132	N
F088821	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_100028922	F033999	N/A	MAKLETITITSGDPTSSEASFSRSNDSYEMGSVILSGTYTNTSFDVQAKIGGTFFDVYDTFGSKYSITVATGKHTLPADVFKDVDTIRLKGSQNEASDRTAQVLLIDFVD
Ga0224906_100028927	F027355	GAG	MGRITKVTGEFMGVRFEVKPTPIRFDKVMDERRNLLLGWYKKNHPTLHEKIESDDYDVEDYTLEELNAINAWRLDKKFRAKYCKYTAEKCIKLDKDLEDSTWESDDLELGTLEEAWDFFTNRRQVPSSGVGLL
Ga0224906_100028933	F021099	AGG	MAFSSLTLTRNNIDALEELTFKGINVTAGTTALNLSEKDNLILAKAIKMLKTDILENLREYINDSTYATETALLDAIHGADSEELLIDLLSYKFLELWFAQDATHQDSYSFAKASKYYQFYNQYLTANLRRLSGLLSKPKTTPRVRFMSVY
Ga0224906_100028937	F088821	N/A	MIDLSKIYSVPKDVAEDIVMKETRHPYYSVVLDRAKIMNSWFQAEYDEYTAISSTVFSDKSYIIEQSTIESDDEYTERLKRMKLFPLEQKFFAAQQRIYDENNVNRMFPENKDFWKYKSGNFDDAGCSITEFYRDKVMFVKEVLGFGAVVTDLMMDNEGEPVLDDSGNVVPYNFVLRPHEIFNFQVKQGVLTLLVTRQMYYDVQNIKKFKWTAYTPEYICVYTQENNMKQKVLEIDNPFGEVPATLLKGQTDANSSFVVGKPRRYSLKGMYLASSELFYDLKKGSELFGHPIPVLTDSIVRSLAGVADDDQYDSRTIKEGVGMAIIIPDEQTIPNNMLYQADMQGLQHLRDVIFGDLMSLIFSMAMVRDKSLVKSNVSGAAKRFDNVDEQGLLASTAMDMEMIENQVLRRMAKVRDEDFENYIVTYSKHYDLSSADEIFSDITEGMQYKAMPLPLLVKLTAEYMRKRSMPQEDIDEVTNYFKEYGMPKSSADLRNLLDILPQEELARQVQLGIESNSEQ
Ga0224906_100028942	F060872	N/A	MREADKVWDIPLWETNHSKQRLLQEEAMDFLSYKLGYEMSEETDDPTKKAYKHFDGYNHYPDGNLTALDYDSSSPVWLCADFNRSPHCWALLQVKKARNGLKQYIIFDEIFSKEALTTEQALKAVELLKKWGISKVLLAGDNTSNQKSGNYGRVGKNDWDYVREVFSNHDISYKNELDIQNPKRKVRVDRVNNAIYAGKNGERRLLINTRCDHVIKDYMYSIVNDKGLKIDNGDRGHMSDAIDYAIWRNEKGSSSPMYVLR
Ga0224906_100028944	F010211	N/A	LFLTAGSVMCNVPCVSKRMPQKTNWSDLLVNVVGHEPPADSIDLRNSFIENCLADQDGGKLTQADIHLVMQQGIYDWEQQALSKSARLNGLIRAPYNTGKSQQVAIGLSAYMTTRKHELETLIVSADGGISAKRILSLRALFMSDMYRYWCREHKFNPVEFDRTDTGSTQRIIVKSRNRTGNPTYEAYAVLTQTTGQRAGVLILDDVCNDEDRISTARRDTVWNKVSNTWIKRVHDKGIVLSVCTPYHPNDANSRLMKSGIFNVLQISVKEDKTGYKVEEWNNLK