Scaffold Ga0224906_1000266

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1000266
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30630
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (68.42%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005195	Metagenome	409	Y
F015278	Metagenome	256	Y
F016900	Metagenome	244	Y
F018642	Metagenome	234	Y
F056152	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_10002661	F016900	N/A	ERIAKMSPKEREAHRRKSMRFGTEGYLTDEMFNQQFKPRPIEEKVAEDKKIIAGKKESTRPGFANRNKELKAEGDPLLQDNVASADDIADLDKLQENSLGMPPEGEDGITNYTNTLEEDRERRKAEELLTAPEKKTLKNENTAQGNNEITLGGPSDDVDFNKTIALAKKYQEEVFKNEGSQAGLVFLANLASGLLTGTTTRSGIAGAMEVFGQAIGPAVNNYATIKLKEGELRAQNRESSLNAALDHMKFLNDAAIAEAENRKPPEIDQYGIIQVRGSDGRLRNYKGIMYKNGTVGMPAGLDANGVEQYVPVPQGAPVIASDGKAIGQFENFLEQKNVDKRLFDIQDVLGNRYNALSVTRDVLKTLNQIDDSGETVKAGAALSIDQFTRRLSGVAKEVLGFEVSSMSLDALEAKVAELQADEYAAIDRDPDLSDAGKEAAKKNLDSKNLIKQAKARLSKRGMLSGLSREEQEKLAVQEVTLTYALANTFKDQDRLTQRDVNAAKEIVNIFSLTRSSKDVKASIEAIGRQLESDIRRQESLYTTAGGLETTLKDLRRLKNFEVFEGEGGVASQLAEDLSLEEIENIIEGIN
Ga0224906_100026612	F015278	N/A	MCERCDELVAVIVHEYNYYCADCALFELNIPFKKAISIEDANLSRKKQ
Ga0224906_10002662	F018642	GGA	MASLKDIQDQIDNNTFDPSKLNARQRQAVDEAIKRGLITGPSMSELQSKRAGAAKDVATIEEAVKNPIGVRLQQTGSSLDGRSEAVLAGDLIGSITPYVAMRKKIFSAAKSKVPGDKSTGLFARTKMFSNFADKLTTRLPGRFKLLGGLAKLVAKVADPTVGRVLASPLGRAEVYSVLGGTAGAGAGSVTYDMLNETVGVAAMDAIASDMENMSPKEVNTDMMANAADSMFTALAWNAGAATLTPVITKGLGKVGRLMIGAKSKDAKELVNIARDKGLPLPIVMTAQEGTGLLGGFASKYFKVLGIMPFINGIGKEALQGAEQKAGREYLNNSVLNYGPLIKTGMLSATIWKQADEAFKQNSNLINASYKAFDTLADTIGNPKVIPTGHVKKMAGDYVDELAMQFPGIKGYAQDKLGDVPLKDLQKLQGTGDPLALFFRYMNAVDDFVTPKQYKGMITTLNRAIQQTGYENIRPTLWSIREALENDLNSFGANITKETFLKDDTVKAAYETLAKTNKAAADADMALKIKSSEQLRDKLYGANDTFSTLMNFYQRANATKVFRDYNATTFTNKALAGIGGMEKKKSQRFFNDLANDVFTRGDPTAIKQFRQLLGADKIVSKKTGQAIGITKGGGEALFNAAKARWMFNSFYKGFDSASSPAGRTMIDEIMNESTVRAGINGTVDVMESMVQKGDVVDFSLDKVRTGNNIFDATKIKFSPKDTSGFNINKFMRELGIADPTDDVAKEKMISILGGRGQAKEFEKFLTYMKAVSDTPIADTSTFMQRRLQLGGLNSFTGALVLGGSAAVNPFAPALFILLGRRAGQILTDPIAMRAFNDALNPDEQIRLLMGKKVGDGVPGVLGIGRRYFKGRDIQTAANILKSPGVVGRLGLTQKREAFARLVNYLNESDADVPRVDPKTVTPEEITERMGQLQASVPAPNYNEETIPKNNFETMFAQDYSGSSGDLQTDTNAVSMLSTATQNEAMVDAEEAPIEAEEKTSIMADLQLESPVAQPPVAPVPPATGQVDAGQFQALFPNDPTGAAIAQRGVRRG
Ga0224906_100026620	F056152	N/A	MQMQKVPRLLKQSIIMMEIMSGEDKMFYLQRMWDLYIDVYVRTPPRGRGRKRKNDPIDKRKAYELCSELTKIFGH
Ga0224906_100026636	F005195	AGGAGG	MSLKAILKAGKELLKAKKPSATPTTGQQQRQITYEPKPSQSQAKELVTQELKNPPVVLKKTKPLQMGDDMAPAFGSSTYDWAMRMGRSKYTADEWLDHLTSTRKVNFKIFGKPAQKTVREQKRFKYDSGPFAGKEVSVSKEELFDSNLAVFNEAGDLTGGLLYAAKKFGLKLDANEVGAMLKLNPINRLKPIELGVNKAAQEAFDVAAKNARNTVRDLQVKYKDRDNLKYELDQIQYYLKADSGVPSRAALKDINESLKMVQKELAIDEKKALNKVIGDINNKVGPMQATKTRYGNETNYTLQGGKDYRETIFTLPEDIPTNASLRSKGGHFGDEIGDANNIYHIRYDTRFTPDGKKVFMINEIQSDVNQSIAKSLTKAQQLSGEQRLNPFNADIELNLLVSQRGKMLRDLDDAVARNEFGRVNAISSSMKDINTKLKRISSQRDYNSNQKDYFPMVEADSYGDHALKYLMQKAARENVDYVAVAPFDKVSFRQGYKAGNERFYGYANGKGIGKKGKAVIPDVMSKNARFYGSKAGPTKISLSDPTKPYKTIGNDTFKYPKDHPLKGKEIKSQYHSSTGMNPEKGTKNIPEGDPRLYFDAYAIKVVPLMRNTQKTYKSKGGLVVDMFKPIRYN