Scaffold Ga0224906_1000205

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1000205
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34325
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (77.78%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004603	Metagenome	431	Y
F005816	Metagenome / Metatranscriptome	389	N
F010392	Metagenome / Metatranscriptome	304	Y
F015990	Metagenome	250	N
F022856	Metagenome	212	Y
F025510	Metagenome / Metatranscriptome	201	N
F026884	Metagenome / Metatranscriptome	196	N
F027830	Metagenome / Metatranscriptome	193	N
F032075	Metagenome / Metatranscriptome	181	Y
F037180	Metagenome	168	Y
F054417	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_100020511	F015990	AGGAG	MTGKGSGRRIEDINKIRNNWDSIFKKRDKKQITKVIIEFEMPGYPSIDEMRNYVEKLHKEDKLVFLTTTTNA
Ga0224906_100020514	F022856	GGA	MIVGNFRDILGKLRDILYTQMPNTRVGDAHISIHIHMYRRAIHLGWIDSPGAGRTL
Ga0224906_100020518	F005816	AGGAG	MDLTNFNVDASSEGKSAVEPGRHVLHWQGEEEALVEGRNGWRGCKMYFEIDGSSIRLNHTFTVGHDNPKYVDSGVKSMLLMAQAMGLKEPPKDTSTAFMGKSVSAELVKDDNGYLKINEDWGKTWQATNQKPKPVENDNIKAGPSEADLDAMGTTVASEDDAPF
Ga0224906_100020520	F010392	GGAG	MVKENTTENVDEPTIKFADDGKEHKINEMPDNAKELMARWQEKKQVRDEFIVKANNDIDDLNTLLGSYEARMKNILEPTEEKKIEVQ
Ga0224906_100020544	F037180	AGG	MSRIAKVDDKSSLNISLSYLLQIIGVAAVAVWGYAHTTERIDFNLRETQNLRANQNKYLFPDIRRLEEQVVKLEKEVIILKTELEAYKKQNANKK
Ga0224906_100020554	F025510	AGGA	MKYITKAWVWLKATIHKFLNWFDSLMTPAPVVKKRGRPRKKK
Ga0224906_100020555	F026884	AGAAGG	MQKLKLKDYLQIMSHNKIFDIEVMVDDMVYVGKEIRAKNKNHALQIMSVMSGGEVNKDSEILYYEERTIH
Ga0224906_10002056	F054417	AGGAG	MSKFNKQKTIDKIIDDFGNCRMNSHWFSKSETQIEWSSHQEVYLILHQDKTWDYSEPKHLDMYVEDLEVQDLKEYSRAN
Ga0224906_100020560	F032075	GGAG	MAKLHYTKYQENYKNYILACLDDEDSLIGKNLSREEKIKYLFDRFNSEYGWKVGRTRNDTKQNVLAEWLSGIAIHIPYSYCDIIELAKNMGSVDYNLSTVQEDRICENYWNFMAYMILLLEEEIKEVA
Ga0224906_10002058	F004603	GAG	MIFSINISGLIIDWCYNLDCQEKQYHKTWIPKLRDIQIITKDLNGLTVSEVKKIILEDIQPDINMVKEHNNKLARARRLNQ
Ga0224906_10002059	F027830	AGGAG	MKNITFTVAFCKYSAHFRDRGFGGELPYISKTYSKATGEGGYLLRDENDMHIAYITKDGKVQA