NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1000106

Scaffold Ga0224906_1000106


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1000106 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45877
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (41.51%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020797Metagenome222Y
F025153Metagenome / Metatranscriptome203N
F042580Metagenome158Y
F047319Metagenome / Metatranscriptome150N
F052892Metagenome / Metatranscriptome142Y
F079230Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0224906_100010613F020797N/AMIKLENILKSIPNQEIVESHLGQWEYPGRITRIPNNRITMQPDPRTGKPIEHILLIIGDQSGERQIGIPGGPNLFFPNDQSVTEYPIGKSKIYKSNQK
Ga0224906_10001062F079230N/AMIDSLIYGIVASSFVIGITRSVLLLYKRFPRLGFGLIYGSLGVKMFALGAFTLLAKPYIDNIVIYASIILSAIIYSNVYVLLKLHGK
Ga0224906_100010620F047319N/AMYTQGETVIVTENIDKKTKEVKHEVGVIMKAFVHKKQTFYDVLLERRTALSFLNTAKTSKRYYINNTLTAKLVESGNIESTIPFKYMLDNEELPIIIA
Ga0224906_100010621F042580N/AMARPKLPEIDKLKKRVRKRYPGSYCVQDSSGDYYIEWKSENLNDTFLMENSSSELEAWKQAVITAKHEQHINRTHPLKALMSQEQKNQNKERITRRIRKL
Ga0224906_100010626F052892N/AMRPTNSLCFLPTVEFQNKRFNVKRLIKEDPNENIEFWKNLIEHDTVLRKDGYLWFLTEITAVEIIEE
Ga0224906_10001067F025153N/ALIKLKDILIEQIGFQIPGTPKQKNIGRKTRQEFAKFFNNFEAGNTKTAISGYAEQIMNSDAPDEVKRNASEILNEMEKVAIDIQDELHTRQISDDEVAETIFDYVNSEMDASDSIEFEQLLWYDNQIDSSINSGMIENAVAIMDQLLHQLEFIRGFILQEFPKISPAGFKR
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