Scaffold Ga0224906_1000081

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1000081
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51441
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (89.39%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002077	Metagenome / Metatranscriptome	596	N
F039881	Metagenome	163	N
F047994	Metagenome	149	Y
F061371	Metagenome	132	Y
F067818	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_100008114	F067818	AGGAG	MKKLAAQALAFQYQLQIENAQAVLNNSNAALNLIDQSLNDIITANEKLKTLNTMMSSAIKEIKEEEKAS
Ga0224906_100008144	F039881	AGG	MTRPNKIFQDTTSYNLKIEKKDYEELKKYSTKESDTFNMQVSIADLIRTSVKLYLEDLRKLYGKETNKDKCATEK
Ga0224906_100008151	F047994	GGAG	MSHQMNDKVFDFINDRWLEMSVEDFKDWLKTHRDTDMVAKVVHDNLDSLEEKWKQEKLDSYPYV
Ga0224906_100008155	F061371	AGGA	MKTLTDIDTQIDALKEVSSNALLKHGFSRSRQRIFDLSKSLDQTWQDYKAIHGKTYYKELTLFVITRSAIGLRYKTIVKRSGLNGVVVHDCLTDLLNEKLIYKKIVDDKLIYRAKK
Ga0224906_100008160	F002077	GAG	MNLLPKQKSKAREISPQQEQFLEVLFENGGNVTDAALKAGYAKGSVTWLRTSLADEIINRTKNILSMNAFKAATRLVTTIDNPIPERGDDLRFRAAESLLNRVGLGKQETTNVNVQAVHGIVLLPPKKDVVIDGN