Scaffold Ga0224906_1000003

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1000003
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 209981
• Total Scaffold Genes: 244
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 189 (77.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047092	Metagenome / Metatranscriptome	150	Y
F049302	Metagenome / Metatranscriptome	147	Y
F073272	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_100000320	F049302	AGGAG	MGFAFDTPNNPYSSAMSEADIDTWWSAHVPTRETWWDDAHGYIMRDIGSRIPVGHTIEHGVNEAGTSYYLTISGPAINKSWT
Ga0224906_1000003201	F073272	N/A	MRYVDNHYISAFKDCIAQTSQHAGYTLPEDVEAYCAILLGSFVDRPDFLPADSFAESYLQLTRRDSANAKELADVCLFVVSVFPDYGVSTDYYINIGKTSYDIASKQLHYNLFQDLCQHFEIVSEVIRLSTTPQQFKVRIG
Ga0224906_100000394	F047092	AGGAG	MIKYFIITANMKNGDAWETRRHTKAGLDTVIQEILKDEQVENFTVVEVGV