Scaffold Ga0196889_1011322

Overview

Basic Information

• Taxon OID: 3300022072
• Scaffold ID: Ga0196889_1011322
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1952
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019141	Metagenome / Metatranscriptome	231	Y
F063588	Metagenome / Metatranscriptome	129	N
F095495	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196889_10113223	F095495	GGA	MSRCKACDAIMTEAELKRTDYNTDKPLDLCYNCMSISTNAALAFENGGLLDADGEESLDLESLGFDISNN
Ga0196889_10113224	F019141	GGAG	MSKIKEQLIGYEQSDWLEHDDHVRITEVEEYLMYAMSVSEMQQIARQHIRHDLYTTSKEEFDKIHYDTIGMHNK
Ga0196889_10113225	F063588	GGAGG	MQFNIAGMFLNVEPRFGIGLDIESVESRPVWTVKDGELSTMAFDGLVLLLPFFIVTLGNVWTELDE