Scaffold Ga0196889_1006388

Overview

Basic Information

• Taxon OID: 3300022072
• Scaffold ID: Ga0196889_1006388
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2708
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM24-C165 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008386	Metagenome	334	Y
F046072	Metagenome	152	Y
F053565	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196889_10063882	F046072	GAG	MNYSTNTNNIVNMKQKYDPHIRVRFDLFDDPQFKTIPNKHKAHCLCVLICLLKFVNNKTLQCYPRKATISSMTGLSYTTIYRATIWLIRAKIVSKKRLPSTLLYTINPRYIVGYRESGPTAHTSVPQDRSDRSGRSLLIEHNINLSNITNLIKEVADKGGDQSKIVSVLSTLPRKTLIKAIEDNDNIYYSKLALAEQDRNGVKLVDIPRSIVDNVRKKTHFGYQNVINKRKDKIARQTKTESFLSELNKKKHT
Ga0196889_10063885	F053565	N/A	MMKNYKDTYQNTLIASGKKDLSIKELQALACLSILSVQGVIYTHYKNKQRKDDNE
Ga0196889_10063886	F008386	GAGG	MSSEKQLILIILVWVVVFGYQYYKNEKKKHDEKLQRHLSKYFDSKW