Scaffold Ga0196889_1005442

Overview

Basic Information

• Taxon OID: 3300022072
• Scaffold ID: Ga0196889_1005442
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2953
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008696	Metagenome / Metatranscriptome	329	Y
F011743	Metagenome / Metatranscriptome	287	Y
F016507	Metagenome / Metatranscriptome	246	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196889_100544211	F016507	AGG	MTSKNLHTKTRNRLARQDALREYMQERGSVQYLFDIIEKIEKLDPNSETFQQDLAKYSKVVDVRHKMLGKYLPELKATEITGEGGGELSITVSDFKSA
Ga0196889_10054426	F011743	GAGG	MNRLTKISIAVAVVAALLWVSNWDYDHEVTMSKEYRYNVCLGYWPDYDNLKPDCKGIR
Ga0196889_10054427	F008696	AGGAGG	MANWHSETIKRFKTLGSDALLYIRQDAYNAAKAGETIDNPKVGQYWDEFHYAAQELRRRNITAVEFKRAL