Basic Information | |
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Taxon OID | 3300022072 Open in IMG/M |
Scaffold ID | Ga0196889_1004821 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3174 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (100.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.12 | Long. (o) | -75.25 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F003677 | Metagenome / Metatranscriptome | 474 | Y |
F003834 | Metagenome / Metatranscriptome | 466 | N |
F009561 | Metagenome / Metatranscriptome | 316 | N |
F023860 | Metagenome / Metatranscriptome | 208 | N |
Protein ID | Family | RBS | Sequence |
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Ga0196889_10048212 | F009561 | AGGAG | MTELKDEHLEVISKNKAKKHELDKLVEQLSDAKESVAVLGNAIECGFLHDKHSLILQEWIVEYEQLSEQLDTHLTEVRDHG |
Ga0196889_10048215 | F023860 | AGGAGG | MDRMKEMFELRNAVKNFLENKLEADIQGAGMTVREPFSADISFKIDNTNYVLTIDEV |
Ga0196889_10048218 | F003677 | AGG | MVDESLYFFNKDVGKKVYEIEYEATYVTKWQVLANDENEAFNIWLEGNKQDLVTEDGKDCVCSYVKDYTQIGKTQVIAEIKYNKEDDEVYADET |
Ga0196889_10048219 | F003834 | GAGG | MSSTKTPIRQAEMDHIDHFLETKYDDRKNTLKTEMQDIIDKESEDNFEAFKNKLNVNKLHKEVYAFYKDHEKFANEMDTILLEKKGKLDNAINTLEDKLEQWKKVRKWENEISRSLLKQPDELDRLLKKLCHEETTRDFYKGPRGKSLQMLDMSKEYCKNLLNAGQSLATVWKTIDLEMSKEKINTSTIPKPEFLAITK |
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