Scaffold Ga0196889_1002146

Overview

Basic Information

• Taxon OID: 3300022072
• Scaffold ID: Ga0196889_1002146
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5071
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010332	Metagenome / Metatranscriptome	305	N
F069045	Metagenome	124	N
F084451	Metagenome	112	N
F095738	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196889_10021461	F069045	AGGAG	MQLPTGKRPRHYADDVIYGRSTLDQVPPDWRELILKHVQIACIQLGSQVARGRDRAARAAMLQRVPLVILPDVERLAKEYYSNKNSV
Ga0196889_100214610	F010332	GAG	MSDRFNTALEPLWLLLEKGMIVRRGVLFVAIWMTLDSYAWAKIYAYNPDPDPLIYAALLGVPSALLAAALKFYNDGRQVVEK
Ga0196889_10021464	F095738	GGA	MSTPEIDLRNMLNQEAYDEDLDDAYNHWVEYSVVPDLAKYLAAFDYDKFDSAVTNFKMFGADPIISWIFEMITDSYDVYYAFMMRERDDIDFNEIAETYVNAYVCLDHYIQYNEEVTLND
Ga0196889_10021466	F084451	GGA	MTILQVMITLSVMMFCAQVAFNMLIEEMKWYWSVYTAVMTYTFVVLLLAVLANVETIFPQVLLKV