Scaffold Ga0196889_1001728

Overview

Basic Information

• Taxon OID: 3300022072
• Scaffold ID: Ga0196889_1001728
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5796
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016900	Metagenome	244	Y
F018642	Metagenome	234	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196889_10017281	F016900	N/A	KSAAAPKEGPGSGRPSMRVKSKELKAEGDPLLQDNVANSDDIADLDAVQENAVNIDSTGMPPGPPGSTDTLPTKVVDKDMPEAEKKNIETENKKQGDNEIALGGPSDDVEFNKTIALAKRYQEEVFKGEGSQAKLVFLANLASGLLTGTTRNSGIGGALEVFGQALGPAVNNYATIKLKEGELRARNREASLNAAVDHMKFVNENTVEESPDRTGGIIQIRGADGRLRNYKGYTLKDGTKQIAAGIGPDGREMFVPVSQGAPIADSNGQLIGQYENFLEQNSVDKRLFDIQDVLGNRYNALSVTRDVLRTLNQMDESGEQVKAGAALSIDQFTRRLSGVAKEVLGFEVSSMSLDALEAKVAELQADEYAAIDRDPDLSEEGKEAAKKNLDSKNLIKQAKARLNKRGMLSGLSREEQEKLAVQEVTLTYALANTFKDQDRLTQRDVNAAKEIVNIFSLGRSSKDVKASIQAIGRQLESDIRRQESLYTVAGGLETTLKDLRRLKNFEVFEGEGGVASQLAEDLSIEEIENIIEGIN
Ga0196889_10017282	F018642	GGA	MASLKEIQDQINNNTFDPNKLNARQKKAVDEAIKRGLITGPSMSELQSQRAGAAKDVATIDAAVKNPIGVRLQQEGSSLDGRSEAVLAGDLIGSITPYVAMRKKIFSAAKSKVPGDKSTGLFARTKMFSNFADKLTARLPGRFKLLGGLTKLLAKVADPTVGRVLASPLGRAEVYSVLGGTAGAGAGSVTYDMLNETVGVAAMDAIASDMENMSPKEVNTDMMANAADSMFTALAWNAGAAALTPVITKGLGKVGRLMIGAKSKDAKQLVNIARDKGLPLPMVMTAQEGTGLLGGFAAKYFKVLGIMPFINGIGKEALQGAEQAAGKEYLNNSVLNYGPLIKTGMLSATIWKQADEAFKQNSNLINASYKAFDTLADTIGNPKVIPTGHVKKMAGDYVDELAMQFPGLRGYAQDKLGDVPLKDLQKLQGTGDPLALFFRYMNAVDDFVTPKEYKGMITTLNRAIQTTGYENIRPTLWSIREALENDLNSFGANITKETFLKDDTVKAAYETLKKTNPAAAEADMALKIKSSEGLRDKLYGANDTFSTLMNFYQRANATKVFRDYNATTFTNKALAGIGGMEKKKSQRFFNDLANDVFTRGDPTAIKQFRQLLGADKIVSKKTGKAIGVTKGGGEGLFNAAKARWMFNSFYKGFDSASSPAGRTMIDEIMNESTVRAGINGTVDVMESMVQKGDVVDFSLDKVKTGNNIFDATKIRFSPKDTSGFNINKFMRELGIADPTDDVAKEKMISILGGRGQAKEFEKFLTYMKAVSDTPIADTSTFMQRRLQLGGLNSFTGALVLGGSAAVNPFAPALFILLGRRAGQILTDPIAMRAFNDALNPDEQIRLLMGKKVGDGVPGVLGIGRRYFKGRDIQTAANILKSPGVVGRLGLTQKREAFARLVNYLNESDADVPRVDPKTVTPEEITERMGQLEAKVPAPNYNEDTIPKNNFETMFAQDYSGSSGNLQTDTNAVTMLSTATQNEAMVDAEEAPVEAEEKMIMADLQLENPTAQAPVAPVPPATGQVNPQQFQALFPNDPTGAAIAQRGVRRG