Scaffold Ga0196889_1001549

Overview

Basic Information

• Taxon OID: 3300022072
• Scaffold ID: Ga0196889_1001549
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6164
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003110	Metagenome / Metatranscriptome	506	Y
F005664	Metagenome / Metatranscriptome	393	N
F020165	Metagenome / Metatranscriptome	225	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196889_100154911	F003110	N/A	MKQILFFALLTMGKLASAQTSEIQLTSICIQDSIHTPVELYKADNIRLNTLYRELQLCDSLRILELYELQDQKEISAQYKKTVELKSQMLKNSAADSRDKMMKLRRTRKVLSWAIVAVVFEGFIIYIK
Ga0196889_10015492	F020165	N/A	MKEIKEMILKVGTMFMPLGFMVAICDYKVYGAINFVIGFVCILELISIKKNKKIKL
Ga0196889_10015499	F005664	N/A	MNHELNNLENDFNRSRDLSLLNCFLIAETIPHVDGDYIVTTFSKYQDHDQYLICCLEDNHDMRILLDVAVDTGEFIDWIVDNDLHHQEDDEYNPFSSFGHDTVKRELEFYDYCNAQNVLQYLQEGNKRKVKYTR