NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196889_1001434

Scaffold Ga0196889_1001434


Overview

Basic Information
Taxon OID3300022072 Open in IMG/M
Scaffold IDGa0196889_1001434 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6457
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (95.65%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008887Metagenome / Metatranscriptome326Y
F033631Metagenome177N
F038854Metagenome / Metatranscriptome165Y
F091001Metagenome108N
F098031Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0196889_100143410F038854AGGAGGMDNPRRIVSATILVEWNDNPKPVVLNNDMPNGLSNDFDDWLTECENEENVK
Ga0196889_100143412F098031AGGAGMKYSVELHVIQIHDVEVDASSYEDARNKAIQEWKDGYIYNDAGSPTFCKEEAKVVSFTSIPTTEEIQVMFAGGKR
Ga0196889_100143414F008887AGGAGGMDRGCCNECGYKADYIIDNNNYADNGYKDLNQVPTDKMLCGVCYEEEVADV
Ga0196889_10014343F091001GGAGMKNLIIKWLGLEGLMDLRITQLQPGTVDAVIYDLNNRYDLEGLTSKFDDYIGTVDDLEYKADKWDDMADKIEDLEINDIVADIEARLDLDKIQQLDDQLTELLAGYKLDVQLVKEDF
Ga0196889_10014348F033631AGGAGMKKYLVKVYNKVDNSYRIAMETPDLDMAEDKMERLSNQGHLVKIDLKPNETPDHLKDVPKDKLETLVEIFKPRL
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