Scaffold Ga0196889_1000664

Overview

Basic Information

• Taxon OID: 3300022072
• Scaffold ID: Ga0196889_1000664
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9856
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (93.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012529	Metagenome / Metatranscriptome	280	Y
F036003	Metagenome	171	N
F067202	Metagenome	126	Y
F090997	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196889_100066411	F012529	GGAG	MIQDKTYKIKVAEYHDAVIYVYERHRKCLNPKDEPENHKWKHWKEVAAVIPVAHDDCDDYQDASGNFHTNVRVVVDALTELYGSSPDYEMGISYTMNTHQYINV
Ga0196889_100066414	F036003	AGGA	MNTRMFNYKDKSVMFINCSLKHCYNTADYMIKRDKNNGYWKPRLYDDYDQDHSSVESIYDWIEIKDSVTDLPPVTTDEIERAYNDLR
Ga0196889_100066416	F090997	GGAG	MRIRVKAEETVYLEYFVDVPEEIVEQSKDKLSKTYLKNAIHNWIDENQSEFNYQDYDSDRSWYDWEEVGEEWNNED
Ga0196889_100066422	F067202	GGAG	MRYKDIVISDHDLECLHNRHIRMAIEEHIIDLGLATSETLTGFNWRLDVRMKVDNDDT