Scaffold Ga0196889

Basic Information
Taxon OID	3300022072 Open in IMG/M
Scaffold ID	Ga0196889_1000326 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022072 Open in IMG/M

Scaffold ID

Ga0196889_1000326 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14954
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (30.77%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

14954

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (30.77%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.12

Long. (^o)

-75.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001283	Metagenome / Metatranscriptome	731	N
F010604	Metagenome / Metatranscriptome	301	N
F054676	Metagenome / Metatranscriptome	139	N
F081060	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196889_10003262	F054676	AGG	MAITIQDQPTTTYISPAFAPIEYLLSSSNSTESGFKIVCKVYLNPAGANTLISTQQISVRPSTTQAILSIQDVVKSFVPITYSVPNGDTVGLITNALNQFRVTFQEYYSGALQGSVVASNTISSLAASPKYVQFASNEWQDYQLATSATFKNLLSNFSNTIPVINAFSGANNWLKVKTDQKTQIQWAQSGATANFKVWLKTLNASFTQISLSQLDLGTTSKGYFALDIGRQEASAHAWDTPIVWTAAKYYAVAIYDESTTELVSNAYLYELDDCDTNYTPYELHWLNRWGGFDSFVFDGKSNQNTEINKTFAKYSPDRISGSTLVYTTQAQRTRAFNTATSESYSLNSRLLQDFEVSGLEDLVTSPEVYWKSEAGFVSVNVSGRTYQHAKSENGLVYSLALDMVIDNSDERQW
Ga0196889_100032623	F001283	N/A	MTTQQAKEILNKPAICKEAERSVRDMKIKLAKYSGDKTEQTKHLQNLDNLINLAYKQAVDIDAYEELLATYLFKMGEQQAKIRELCELNAMSNKIVEL
Ga0196889_10003266	F081060	GAG	MQNSLYNNLDKYWQKVVDDLVQSLKDVGRYASGNTAQAIGDGNAQPVTITANGFKITIAMPNYYEYLDEGVSGAKNNTGISRFKYTNKMPPIKAIRKFMLNRGINAPRTSNTKSGKRQDAEKIRNGIAFAIARSIFNNGTKRTDFYTNVINDKKLIAFEQMLLAQYSNYVIELIKIV
Ga0196889_10003268	F010604	N/A	MEHTKLSKMTVGQYQLINEIDSTLPVMEQNIYAVAAIKDITYEEASKVKLKDFGLMMAELGEFNIKQLEKLKINSKVILDGRVYHLEHRPEKLTSGQLLDIINIRSKYSGEGVKVMDLLLAAISKPEGKNYGEDNLSLNERAALIRGTELDKVWNIFVFFWNLWNDYLNNTEDSLSKWMKDTLKMTREILDNDGDYSA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0196889_1000326

Overview

Ecosystem & Geography

Associated Families

Sequences