Scaffold Ga0196889_1000165

Overview

Basic Information

• Taxon OID: 3300022072
• Scaffold ID: Ga0196889_1000165
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21484
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (70.59%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003361	Metagenome / Metatranscriptome	492	Y
F005819	Metagenome / Metatranscriptome	389	Y
F006971	Metagenome / Metatranscriptome	361	Y
F022417	Metagenome / Metatranscriptome	214	N
F027815	Metagenome	193	Y
F028777	Metagenome / Metatranscriptome	190	Y
F050395	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196889_100016511	F006971	GGA	MIYQNIEYKKHQKIKFVIPTDLRIIDPQTKNILWKYGTIQLFANNKISAWVLENNTKEPIRISLFCILPVH
Ga0196889_100016513	F027815	GGA	VDSIDKDYILADNMFSDNPVFVDISQEFEDDCGDACKI
Ga0196889_100016515	F005819	N/A	MDYIDDMSLALPNQQQVGESNVDFKRFQYYLALGAGRSLSKVSENFSLTERRIYQISSKNQWQDRVKAINKMLNEQIIGEVFAQVGETARDLAQELKPVIFRIINEINERDLASLNPTELKGLLDICYKMISQIYGLGTPQVTVNHIEQPQIKFKWDWEQDDEPDY
Ga0196889_10001652	F050395	N/A	MYPLKRKNKFNWAYKFLYWNGDENIVHLYTIETQEGFQVAESAAWGNATFDGCTNMEYIGKNKMEVENGTNA
Ga0196889_100016522	F003361	N/A	MKLTLNGALDLSRSINSQTIWNKRSTDYFNELAKELKQDSLNSLSNKPSPRSQAGRGNKNTGATRRSVFTAKLGNTNRLRMSEGFKLATDKQYAPFIHGKPIYRGFSPVRRTRPFFPPYQEGSSLAKWAKRGQPKMNAFVVARAISKRGLKMKPFIGGVVYEKQKEIKDRGQEMLELIAKDIARSVR
Ga0196889_10001653	F022417	GGAGG	MAQMPKFLEDYTTVDELINKMNTEYPECRLIAEIIGYGDDWVIFKSSFYETKEDTEPKAVAYAKQTSKDHNSWFEMANTKANGRCLRIVFSESTLAEEMIGIAPSKDAAPEKSNLDKKVEALEAEGLVTDISHKAQAVMNSIKDFAMDCTAQDLDKARLYTASALTELGIRKEDVSITNLQAVKDKIQDISNSEKSA
Ga0196889_10001654	F028777	GAG	MLGLFARNKHNYMEILFLEKDISEFRKIRYILEVEGRICSLDPEFSTSGNLRKAVHRLNRDYNSKIYKEECNCNFKVKGKLNMDGTPRKHYAYIKDWAS