Scaffold Ga0196889

Basic Information
Taxon OID	3300022072 Open in IMG/M
Scaffold ID	Ga0196889_1000076 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022072 Open in IMG/M

Scaffold ID

Ga0196889_1000076 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32401
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	53 (89.83%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

32401

Total Scaffold Genes

59 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

53 (89.83%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.12

Long. (^o)

-75.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011887	Metagenome	286	Y
F045855	Metagenome	152	N
F050749	Metagenome	145	N
F058448	Metagenome / Metatranscriptome	135	Y
F059448	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196889_100007610	F058448	AGGAG	VSNLLDKVIPKELQYDGDCPWVKFKNARKYQDNSIVISKDVGGLSLVATWVRTDSFTEDR
Ga0196889_100007614	F050749	AGGAG	MIESRFLDKAAATELLSNNWHKNRKIHRGTKDQHVKDLAFKITQGRWVVDAMETPILIDTDGVLYNGQNRCMAVILADQGVVVQCRIESPEECQRLYASLDLGKARSIADITGLNQSNIVQPILYLMRCAGLEGRLKDEAVVSRIADTYIGDILRHFDQNTRWVKNNRCFNSVQFKAAMAYCVHKRVLPDYEAISVLEMLQNNKDYHWPSMYLNYREQIMFPNGKLNTGGKTVANDKFCRGVYLIERRMKQQSKIQISSGFLEDLASNVRRVISWAAVE
Ga0196889_100007620	F059448	AGGAG	MMDTGFKTIIEVMKQGSWLTDLEVAERAKMKLDAALYYLRRLRRLGLVISEWVHGQRVWGATTCRT
Ga0196889_100007624	F045855	GGAGG	MKARINITQRMLNKSIIDANKSVVAFVRNCYPTLGYDFIENGGKNTLLAYYDDGHQYTPTSIRLYRRPRGDKLLSVEGLTKRADAGNVMTFTHDKESNRIIIRLELGEPPKEINLIE
Ga0196889_100007633	F011887	GGAG	MELAKTDYENETELSAAREMIERRDAELARLREELSQSKEDAATQRNFNNENALLLDDIRLAFWRLHKDQIGAMISGEIAEQLKTKETAFDITDYFDEIREDITYNFDIASFQSEIEEIVSERDINDEVTEIVEDVLRGAKITLG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0196889_1000076

Overview

Ecosystem & Geography

Associated Families

Sequences