Scaffold Ga0212026_1001306

Overview

Basic Information

• Taxon OID: 3300022069
• Scaffold ID: Ga0212026_1001306
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2189
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.130153
  • Long. (^o): -75.249887

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006685	Metagenome	367	N
F009001	Metagenome	324	Y
F017633	Metagenome	239	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212026_10013061	F009001	N/A	NPYLTMSVTIYLTDHNGRKVAFFYRIDSERYLTAPQLIWACRQHPEYQGRAESKEDFIEQAKGVIKQLNRSRKKCKECDNDLHLRENESNLCDTCNPITN
Ga0212026_10013062	F017633	N/A	MQSDNQLTDFLPMQDLDTDHIKALIHHYLSVREKLPDNLTVRDRLEELQAELINRTSTIEGMIRQTTGNPIQNQ
Ga0212026_10013066	F006685	AGGA	MREWGRTAYRNRQAKLRMEGESSKTEASKRMLKVMAPRLGKRVDEFMYTFGGNTQHTTPLFLTFVLDMCPYQIASIALQTLLDHLHFNLPVGRMAYKIGKAFENQARWDKAMEEMHPHKKDLLAFDDRSKAMKLKQFYDYEEERFTLWDSRCKAGLGAWLLETIREETGIWELDFALGRQKGHKPERIVKASGGYTDWVKRFDAWKETTRVFKMAIPDEPIDWYTLVGGGYSLKHMPPQEFFTGKPMSWFKDYESSYQHAFSAVNKLQKVSWKI