Scaffold Ga0212021_1015477

Overview

Basic Information

• Taxon OID: 3300022068
• Scaffold ID: Ga0212021_1015477
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1369
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005813	Metagenome / Metatranscriptome	389	Y
F022999	Metagenome	212	N
F055654	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212021_10154771	F005813	N/A	ADARKMCGKDYSTVDVPVDKPSLLKFLNFNQVGSHTSNDKTETHYEVYIPNEQRESEALTPEALSWIRWSHDSMCRGQYDDAKEMLRKGLELTKKEKTNGNNN
Ga0212021_10154772	F055654	AGGAG	MEIIIDCGDKELAKAMADALSKETGVARDKFKESTDDVDTSVDATRDQSGS
Ga0212021_10154773	F022999	AGGAG	MMWILVWMQLVTNQGVDYYQLGTYGKPEECQLALKEAVVLVNHSSETLACLEIDAR