Scaffold Ga0212021

Basic Information
Taxon OID	3300022068 Open in IMG/M
Scaffold ID	Ga0212021_1001421 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022068 Open in IMG/M

Scaffold ID

Ga0212021_1001421 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2837
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

2837

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.12

Long. (^o)

-75.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F034713	Metagenome	174	Y
F059991	Metagenome / Metatranscriptome	133	N
F074141	Metagenome	120	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0212021_10014212	F059991	N/A	MSNPQLIHRANENSSLFNTVKARNSKQNVFDYVNEGELNVCAYAKSRIVVNPTTSLNADGGQTIKFELPNFGLLADMYLQTEFARGDTNADTGAKDCFLVDMAGAFTFSKIRVVYNGNTVFETTPEHLVASLYGRANREQSLVLDGMLGSGIVGAASDTHTSLEGRMAMASSFGGQKLSCPLKCWFSESVGRNFDLYSLSSKCFLEVDYRPILDVHGKAETAADRITYAGSNLICYLNELSPQELAAYQSRNYAPNTVSSQLGYTTTLLSESIAAPVLATATTKGNTIKINSISGLVRRLYVFATLDSDRASTTAKAYMNLVDISSIKLSANNQTIYEIQDCGVGIDNLNRSAGNGYQTDQFVEMYHNKLIGPCNSTVASDTFKLMDIGVDKSLGKTTGDEFDFGRVKVINFGMNPDDYSSADGSLALSQVNVPELEVKFPTGTSGAHTVHVVAEIITLNTYNTSATGQINFKSISE
Ga0212021_10014214	F074141	N/A	MSDDTADFKDPHYAKKNKKLCIYCSYKCAVPSKNNQFCSEICRLLHLSVSKELNIEDIGKLIKLSKVDLIHIILNLKCQNISIENLHKILDKPYEYKQKILVKNQGSFLLDFS
Ga0212021_10014215	F034713	N/A	MVLLTFSFTGENTTGAATFTTTKEYKFKNLYLEDVKYNIFNENLENTIDKGTANDGLSSVNTLITSPLGLHMDFLDQADCVLYSLGDGSGETLNTAQNINGLIPIGYAGKVGSQPISTRNTMSHSYPYKLISNRPQTWASGKSLVFNLYFRDVMTDGIIKDWAVMSGTTDAFSDINSISITLRLE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0212021_1001421

Overview

Ecosystem & Geography

Associated Families

Sequences