Scaffold Ga0196895_1014291

Overview

Basic Information

• Taxon OID: 3300022067
• Scaffold ID: Ga0196895_1014291
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 866
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.130153
  • Long. (^o): -75.249887

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005537	Metagenome / Metatranscriptome	397	Y
F058911	Metagenome / Metatranscriptome	134	N
F071633	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196895_10142912	F005537	AGG	MSDNVKFISEIERLLKQKQDDYGEFEHTSYVMSGILEKYLSVHNNCEVKVPLKLFGIFMIFLKLWRVMQSENYKKDSFDDINGYSELLRRLVINEQEKR
Ga0196895_10142913	F071633	N/A	LKVVFLILVIYTGDGNLKYEKIPFSYSLLPITCDEMYEKNVKYVENPDYTEGNGQVWMLTKYKNQNVVAHYCKDSEGNYVR
Ga0196895_10142914	F058911	N/A	KRDGNTKFVKVFAQVGVLFKGDDKFTGEMNYSEAGGHKGLIGWINESGNILSGYKNDPRPKQAKPQSKEIPF