Scaffold Ga0196895_1000045

Overview

Basic Information

• Taxon OID: 3300022067
• Scaffold ID: Ga0196895_1000045
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14100
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.130153
  • Long. (^o): -75.249887

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037180	Metagenome	168	Y
F092098	Metagenome / Metatranscriptome	107	Y
F104980	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196895_100004511	F037180	GGA	MNQIAKVDDKSSLSISLPYLAQIVVAISVGVWGYANITEKIDSNAQETRNLRGNQNNYIFPDIRTLEQQVVELEKEVLILKTEIEFYKKEIEKKD
Ga0196895_100004521	F092098	AGGTGG	MRITIDIETLNSAFWNHCEDSENPTFNYSEVERILKNILPRIEISDFGKVNDINGNTVGKFTVERNKEEL
Ga0196895_100004524	F104980	AGGAGG	MTFADKFDDDHFTWQDHIKGIDKPVLWEYKNKEKCFYQYPTYKRSDYKILIELTKDQKKIALDYLEELHKPLNEETRQHNNEKARLRRANR