Scaffold Ga0224902_100042

Overview

Basic Information

• Taxon OID: 3300022066
• Scaffold ID: Ga0224902_100042
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5639
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008400	Metagenome	334	Y
F025172	Metagenome	203	Y
F072846	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224902_10004211	F072846	AGGAG	MRIAAHKQAPKLTSFEVFAYKQIKGQRACMKVLEVEARTAQDAGKTGQSFSKMMTYEYSHVREVR
Ga0224902_10004212	F008400	GGAGG	MSKPDNNDLLPKLALGMALFIALKFVPKVLAWWAKRNKKQGEIL
Ga0224902_1000427	F025172	AGGAG	MTHHAAKLFPIALQELLEIGEKGIKQREQRERAKRGARPRETRACMHGACKQSFTEKEKIQLTFNLK