NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224902_100010

Scaffold Ga0224902_100010


Overview

Basic Information
Taxon OID3300022066 Open in IMG/M
Scaffold IDGa0224902_100010 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11181
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003196Metagenome / Metatranscriptome501Y
F003423Metagenome / Metatranscriptome487Y
F028814Metagenome / Metatranscriptome190Y
F077364Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0224902_10001011F028814GGAMSILIMMKEGGSLGIDTIGNLPIDEDIDLLPEAGGAINVDLQLMLWSDTGFALQYLDVDEMLLLGA
Ga0224902_1000103F077364AGGAGMAFDTLGRPTNKEVDNESIFKYRPGQIVEKDIYLDTGDYINPGQDANGNPGIAKQYQGETVSSPKPKDSGRSIAEGTTLAQSLYNFLPDEVIDEFAKAWVKSGDPDVAIGTTRQTKAWKDNFGKLMRDDGTLVMDEMTFLSTKASYKQTLAEVGIQDFTDFEDEFEDMATGFETDDPVSAEEFQARIDMVYGGVKDQIPEVEKLFRDRFNIKLDAPTIFGALINPKIQDKILAGEIATLQLQAEASSRGFTTTFGRFQELRNLGLTQEQAQGIYGTASDFISQASSVGRDLNINTLEDAALGDTSAQQRLQRIQAEVQSKGGLTLGAAKKGDEVIGLTAD
Ga0224902_1000104F003423GGAGGMEEFDAPDNGVKQMRETIDRKDDAIKKLEAELASYKDKEIDNVFGNLGLSTDKGFGKALKQVYDGPVDTESISQFAKEEYGWESSGLAQEVTQPVVEPIVQDDARSRVAALDANSSSDVPMSVNDELVQALKGASVKDSLRAKLTIMDNEKEK
Ga0224902_1000106F003196AGGMQLQKEILIDISDNAVNSSAAQCDGLLLSGIVFPAAMTGATVTFDFSFNGTTWYDVVETDGTEVSYTVSAGNVVRVDPSGWAFASPGFLRVTSSNSEAADRTINLIFKQS
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