Scaffold Ga0224902_100002

Overview

Basic Information

• Taxon OID: 3300022066
• Scaffold ID: Ga0224902_100002
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34656
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (87.27%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022999	Metagenome	212	N
F052611	Metagenome / Metatranscriptome	142	N
F055654	Metagenome	138	Y
F061779	Metagenome	131	Y
F105094	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224902_10000213	F105094	GAGG	MKYAVMIMFDTDEDYNYVPESWPCNTNEKYKPKLFDTFEAAEKERSKWNTGIIVDYSDEILRPMTEKERQRAKERKLANTG
Ga0224902_1000022	F055654	GAGG	MEIIIDCGDKELAKAIADKLSEETGVARDKFKENTDDVDTSVDATSD
Ga0224902_1000023	F022999	GGA	VTSQGVEHYQLGTFTKEADCQVALKKAVVLVSTSSEMLACLEVDTRQ
Ga0224902_10000237	F052611	GGA	MIDIETDTVNQRCVIKSDKMMSEIYVEKENSGYIFFIIKFEKGKVPQELSGRYSSLEKGKQAVESYLRDKAKTKSLQRTEYAAKREIERNGSKSKSEGSQ
Ga0224902_1000025	F061779	AGGGGG	MLPDEMEAEKNRKMILAQADEIEILKRNVRQLQGQYQSALIHNKRLIEQNAEAMVIIGHKQQELDSMEESECFCGLADEPVLATEEI