Scaffold Ga0212024_1001787

Overview

Basic Information

• Taxon OID: 3300022065
• Scaffold ID: Ga0212024_1001787
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2318
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002374	Metagenome / Metatranscriptome	566	Y
F007722	Metagenome / Metatranscriptome	346	Y
F013311	Metagenome / Metatranscriptome	272	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212024_10017871	F002374	N/A	MNQVLLYASVILASVSFFLCCYACVRVGKLLNSVKGLDWDTIASLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLQYAMKQQS
Ga0212024_10017874	F013311	N/A	LAFLGDFGKFFGLGSSEEVLGDVGSTIGGAVAGPGGAKIGEQTGRALGRATNNLAGSDASPVSTADQALEQSAVPVSRMGNIPQETSTMTGTTGTTMQAGFGSLIPGITSGLRSAFPQIGKFISSPAGSVGTGIATGVGVNMFTGSDISKVKPVLTQSRRNKARVRQLVNFMGINGAANFLSQASGQTISGNDVVQLLLRTFRNDGAFITKAQVRNLRRTTNRFKSLEKQVKEATSMTRTTRRSPTRRASSTTLIKN
Ga0212024_10017875	F007722	N/A	GLEWDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLQYAMKQQSNVHDIKKNNLG