Scaffold Ga0212024_1001466

Overview

Basic Information

• Taxon OID: 3300022065
• Scaffold ID: Ga0212024_1001466
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2437
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008883	Metagenome / Metatranscriptome	326	Y
F026889	Metagenome / Metatranscriptome	196	N
F038216	Metagenome / Metatranscriptome	166	Y
F056586	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212024_10014664	F056586	GGAGG	VKHTYQVIMTKIYEVKVEAESREQAEEIFDNFGDWEELLRVHTLDIEPADYLTLREED
Ga0212024_10014666	F008883	GAGG	MNFGRYTIWYNHEDHVWDIYDGRKGFKYPEYTINNYSRLLCGLRDRLGFLDTDRNHRRFWRVMRWWDRLRHGRR
Ga0212024_10014667	F026889	GGAG	MNNVIEEYLALVERTVYTNDIFAYQELEQLEEQYPELADLVYQSAGPLAYDIHNNEVTS
Ga0212024_10014669	F038216	AGGA	MKQVNYGLGETIEGSHRTLSDAVNMYAIYYSDWTEVLEELSQYYASDEWKNSGYGRDLPRHVYLNKKRNNIIRHMHEIGAELRSVGIDVDLCNHSNPDEYFDQFDYDYAA