Scaffold Ga0212024_1001161

Overview

Basic Information

• Taxon OID: 3300022065
• Scaffold ID: Ga0212024_1001161
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2596
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000754	Metagenome / Metatranscriptome	906	Y
F002192	Metagenome / Metatranscriptome	585	Y
F063773	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212024_10011611	F000754	N/A	MDFTVNNAEFSKNASVSTLVTGQPFGWSNTGYVMNDMVTTGQVRNRPVITFTNNTAATRTIDVAVFIGG
Ga0212024_10011613	F002192	N/A	MDQVLLYCSLTFAILSLFISFYAGARVGNFIKSTQGLEWDAIANITGDLATTKKTIQTLNNRINGMHSPKVAEQELMLQLLQNQQKGQPNGKTTMQGG
Ga0212024_10011616	F063773	AGGAGG	LAQEFTIKSEVIESKINQLLPSQGGYAPGVDFSASTMVVPII