NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212024_1001159

Scaffold Ga0212024_1001159


Overview

Basic Information
Taxon OID3300022065 Open in IMG/M
Scaffold IDGa0212024_1001159 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2596
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001611Metagenome / Metatranscriptome663N
F002374Metagenome / Metatranscriptome566Y
F013311Metagenome / Metatranscriptome272Y

Sequences

Protein IDFamilyRBSSequence
Ga0212024_10011592F002374AGGAMDQVLLYVSVILASVSFFLCCYACARVGRLLKSVKGLDWDIIASLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLHYAMKQQNNVTDIRKNNIGG
Ga0212024_10011593F013311AGGAGGLAFLGDFGKFFGLGSSKEVLGDVGGTVGSLVGLEGAGRKAGQFLGEATSSLGGGSDVNLSPLSTADQALEQSAVAVSQRGNVPQEIGAQQGTTGMATQQAFIGGIPGAIQGLRALAPQVSKFFGTPGGSLAIGTGTGVGVSMFSGGQMQREKPVLTQSRRNKARVRQLANFVGIPGAAQFLSNASGRNVTEQDVINLLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMTRTTRRASPMRRASSTTLIKN
Ga0212024_10011594F001611AGGAGGMPLVQKTLTLAAGATSDNILANTNYEFIDGNVRLRVASAVDTAGTSATSDTFLNVSVNNAEYSKDVSVPALVTGQPFGVLNGSYLNNDLLTTGSQRNRVLVRFTNDTGATRTIRCGVFIG
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