Scaffold Ga0212024_1000626

Overview

Basic Information

• Taxon OID: 3300022065
• Scaffold ID: Ga0212024_1000626
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3039
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012581	Metagenome	279	N
F013187	Metagenome	273	Y
F029779	Metagenome	187	Y
F055714	Metagenome	138	N
F104989	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212024_100062610	F013187	AGGA	MKKIKKKPVRNTWVYIYGDECQEIWEHFGLDFPNPDDRMKLKFVKYETREMQDG
Ga0212024_100062611	F012581	GGAG	MAKYTLYAKKVYYYRKDINAQDRKSAEKRGADYEADDNAERLFEPSGEEFYITSIEESDD
Ga0212024_100062612	F029779	AGGAG	MSDKEKYEELCEALAGIDATERYTHEDILSYVYNLKKIEEKFYDNKN
Ga0212024_10006265	F055714	GGAG	MRKWTSTSVVINSATEEMVKSALKDGWNFEVLTEGEHLCENSTDFDEIMENIHAVDGILEIHIHKAGEKSDWCNVILHNGDPDCEISDCTADGYIDEWTERTDFGQKPWNDGFVHLEDGVGGVFTSRKIK
Ga0212024_10006269	F104989	GGAG	MSNNMTPREHWELHQGLWNTIGCDMQVYKQDSDRIIYIDKNSKWAYKYEHGVIERKLQTNPDRKYR