NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212029_1014935

Scaffold Ga0212029_1014935


Overview

Basic Information
Taxon OID3300022063 Open in IMG/M
Scaffold IDGa0212029_1014935 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)999
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.8455Long. (o)-76.4191Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034185Metagenome / Metatranscriptome175Y
F056618Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0212029_10149351F056618N/AYRITIEQYEYKYSVEVDHSDISFTDYVDLLRQITLAAGWGIDAVEEFFDE
Ga0212029_10149352F034185N/AMFTHKKNNMSHDLLSYKEARIEALLNEINRLELENEKLTTYVFELCDKDCPDEYKKIVKVDVFKG

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